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A scientist mutates a gene in yeast and then looks to see what effect introducing this mutation has on the phenotype in yeast. This is an example of:


A) DNA fingerprinting.
B) next-generation sequencing.
C) transgenic research.
D) reverse genetics.
E) positional cloning.

F) A) and D)
G) A) and C)

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The full-length (i.e., containing the entire protein coding region) cDNA for a specific eukaryotic gene in humans is 1500 nucleotides long. You screen a pig genomic library with this cDNA and isolate two genomic clones of different lengths. Both clones are sequenced and found to be 1900 and 2100 nucleotides long from start codon to stop codon. How would you explain the presence of two genomic clones in pigs and the discrepancies in their lengths compared to the cDNA probe?

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The presence of two genomic clones in pi...

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A gene does not contain the necessary restriction enzyme sites for cloning into a plasmid vector. What is a possible option?


A) Increase the amount of gene used.
B) Add linkers to generate new restriction enzyme sites.
C) Use a cosmid as a cloning vector.
D) Use dideoxy sequencing to obtain the sequence of the gene.
E) Cut the DNA with a blunt end cutter.

F) C) and D)
G) D) and E)

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Use the following to answer questions You identify an RFLP in mice by digesting genomic DNA with HindIII enzyme and radiolabeling a piece of probe DNA. Southern blot analysis shows that the probe detects a 2-kb fragment in one strain of mice and a 4-kb fragment in another strain of mice. The two mice strains are crossed to produce an F1 generation. Two F1 siblings are mated to produce a dozen F2 progeny. You isolate genomic DNA from several F1 and F2 individuals, digest with HindIII, and perform a Southern blot with the same probe. -How many bands would be seen in the Southern blot of an F2 individual?


A) one
B) two
C) three
D) four
E) one or two

F) A) and B)
G) B) and E)

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A scientist attempts to use the CRISPR-Cas9 system to edit a single gene within a cell. She finds that, in addition to editing the desired gene, she has edited several other genes as well. What are reasonable options for her to try next in order to target just the gene of interest? (Select all that apply.)


A) Add less Cas9 enzyme.
B) Create a longer sgRNA.
C) Try a different sgRNA that will still pair within the gene of interest.
D) Use separate crRNA and tracrRNA molecules.
E) Use a higher-fidelity version of Cas9.

F) A) and E)
G) A) and C)

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Use the following to answer questions A student carries out PCR using the following steps: Step 1: 94°C for 1 minute Step 2: 60°C for 30 seconds Step 3: 72°C for 30 seconds -Which of the following lists the CORRECT terms for these three steps?


A) denaturation of the double-stranded template, extension of the new DNA molecules, primer annealing
B) denaturation of the double-stranded template, primer annealing, extension of the new DNA molecules
C) denaturation of the double-stranded template, extension of the new DNA molecules, hybridization of the template
D) degradation of the template, primer annealing, extension of the new DNA molecules
E) hybridization of the single-stranded templates, primer annealing, extension of the new DNA molecules

F) A) and E)
G) All of the above

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A cDNA encoding a protein that is specific for a particular strain (strain Q) of bacteria has been cloned. How would you determine whether an infection contains this particular bacterial strain?

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To determine whether an infection contai...

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The difference between PCR and real-time PCR is that real-time PCR:


A) can measure the amount of DNA amplified as the reaction proceeds, while standard PCR cannot.
B) can amplify DNA a billion-fold within just a few hours, while standard PCR cannot.
C) can determine the DNA sequence, while standard PCR cannot.
D) uses DNA polymerase, while standard PCR does not.
E) requires primers, while standard PCR does not.

F) B) and D)
G) A) and B)

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Which of the following statements is INCORRECT regarding the differences between a genomic library and a cDNA library?


A) Genomic libraries contain fewer restriction enzyme sites, whereas cDNA libraries contain many more.
B) A genomic library is prepared from total genomic DNA, whereas a cDNA library is prepared from mRNA.
C) Genomic libraries contain much more sequence information and are much larger than cDNA libraries.
D) Genomic libraries contain coding and noncoding (regulatory, intron, etc.) sequences, whereas cDNA libraries contain only coding sequences along with their associated 5' and 3' untranslated regions.
E) cDNA libraries are generated with the use of reverse transcriptase, whereas genomic libraries are not.

F) A) and B)
G) A) and C)

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Ampicillin resistance is to ampR as _____ is to lacZ.


A) Bt toxin
B) G418
C) cleavage of X-gal
D) penicillin resistance
E) gancyclovir

F) A) and B)
G) C) and D)

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All of the following are required to create a cDNA library EXCEPT:


A) RNA polymerase.
B) DNA polymerase.
C) reverse transcriptase.
D) dNTPs.
E) mRNAs.

F) B) and D)
G) D) and E)

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The recognition site for BamHI is The recognition site for BamHI is<sub> </sub>   <sub> </sub> <sub> </sub> )  Which of the following restriction sites when digested would create a cohesive end that could be ligated to a BamHI digested DNA fragment? A)  EcoRII <sub> </sub>   <sub> </sub> <sub> </sub> B)  PvuII <sub> </sub>   <sub> </sub> <sub> </sub> C)  EcoRI <sub> </sub>   <sub> </sub> <sub> </sub> D)  BglII <sub> </sub>   <sub> </sub> <sub> </sub> E)  CofI <sub> </sub>   <sub> </sub> <sub> </sub> ) Which of the following restriction sites when digested would create a cohesive end that could be ligated to a BamHI digested DNA fragment?


A) EcoRII

The recognition site for BamHI is<sub> </sub>   <sub> </sub> <sub> </sub> )  Which of the following restriction sites when digested would create a cohesive end that could be ligated to a BamHI digested DNA fragment? A)  EcoRII <sub> </sub>   <sub> </sub> <sub> </sub> B)  PvuII <sub> </sub>   <sub> </sub> <sub> </sub> C)  EcoRI <sub> </sub>   <sub> </sub> <sub> </sub> D)  BglII <sub> </sub>   <sub> </sub> <sub> </sub> E)  CofI <sub> </sub>   <sub> </sub> <sub> </sub>

B) PvuII

The recognition site for BamHI is<sub> </sub>   <sub> </sub> <sub> </sub> )  Which of the following restriction sites when digested would create a cohesive end that could be ligated to a BamHI digested DNA fragment? A)  EcoRII <sub> </sub>   <sub> </sub> <sub> </sub> B)  PvuII <sub> </sub>   <sub> </sub> <sub> </sub> C)  EcoRI <sub> </sub>   <sub> </sub> <sub> </sub> D)  BglII <sub> </sub>   <sub> </sub> <sub> </sub> E)  CofI <sub> </sub>   <sub> </sub> <sub> </sub>

C) EcoRI

The recognition site for BamHI is<sub> </sub>   <sub> </sub> <sub> </sub> )  Which of the following restriction sites when digested would create a cohesive end that could be ligated to a BamHI digested DNA fragment? A)  EcoRII <sub> </sub>   <sub> </sub> <sub> </sub> B)  PvuII <sub> </sub>   <sub> </sub> <sub> </sub> C)  EcoRI <sub> </sub>   <sub> </sub> <sub> </sub> D)  BglII <sub> </sub>   <sub> </sub> <sub> </sub> E)  CofI <sub> </sub>   <sub> </sub> <sub> </sub>

D) BglII

The recognition site for BamHI is<sub> </sub>   <sub> </sub> <sub> </sub> )  Which of the following restriction sites when digested would create a cohesive end that could be ligated to a BamHI digested DNA fragment? A)  EcoRII <sub> </sub>   <sub> </sub> <sub> </sub> B)  PvuII <sub> </sub>   <sub> </sub> <sub> </sub> C)  EcoRI <sub> </sub>   <sub> </sub> <sub> </sub> D)  BglII <sub> </sub>   <sub> </sub> <sub> </sub> E)  CofI <sub> </sub>   <sub> </sub> <sub> </sub>

E) CofI

The recognition site for BamHI is<sub> </sub>   <sub> </sub> <sub> </sub> )  Which of the following restriction sites when digested would create a cohesive end that could be ligated to a BamHI digested DNA fragment? A)  EcoRII <sub> </sub>   <sub> </sub> <sub> </sub> B)  PvuII <sub> </sub>   <sub> </sub> <sub> </sub> C)  EcoRI <sub> </sub>   <sub> </sub> <sub> </sub> D)  BglII <sub> </sub>   <sub> </sub> <sub> </sub> E)  CofI <sub> </sub>   <sub> </sub> <sub> </sub>

F) A) and C)
G) B) and D)

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You have two probes that detect RFLPs that are closely linked. You have been asked to help settle a paternity case. The two possible fathers have the following RFLP pedigree. The child and mother are also probed with these two RFLP probes. (The data below the pedigree are two Southern blots.) You have two probes that detect RFLPs that are closely linked. You have been asked to help settle a paternity case. The two possible fathers have the following RFLP pedigree. The child and mother are also probed with these two RFLP probes. (The data below the pedigree are two Southern blots.)   Which male is more likely to be the father? Explain your reasoning. Which male is more likely to be the father? Explain your reasoning.

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Which of the following is NOT a bacterial cloning vector?


A) plasmid
B) bacteriophage λ\lambda
C) agrobacterium
D) bacterial artificial chromosome
E) cosmid

F) D) and E)
G) B) and E)

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Which of the following can be used for genetic engineering in plants?


A) Ti plasmid
B) Agrobacterium tumefaciens
C) selectable markers
D) Ti plasmids and Agrobacterium tumefaciens only
E) Ti plasmids, Agrobacterium tumefaciens, and selectable markers

F) B) and E)
G) A) and B)

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You have discovered a gene that enables organisms to accumulate gold in their tissues by concentrating trace amounts found in normal soil. You want to transfer this gene into a plant. Order the steps below that would accomplish this goal. 1. Infect the plant with the Agrobacterium strain. 2) Digest the gold gene and a Ti plasmid with appropriate restriction enzymes. 3) Insert the gold gene into the Ti plasmid. 4) Amplify the gold gene with PCR. 5) Transfer the recombinant Ti plasmid into Agrobacterium tumefaciens. 6) Use a selectable marker to identify plant cells that have integrated the recombinant plasmid into their genome.


A) 4, 2, 3, 5, 1, 6
B) 4, 5, 2, 3, 1, 6
C) 4, 2, 5, 1, 6, 3
D) 4, 3, 2, 5, 1, 6

E) B) and C)
F) A) and D)

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The lungfish Protopterus aethiopicus has a genome 38 times larger than that of humans. Most of the DNA in this species is noncoding repetitive DNA. What type of library would allow you to compare just the genes in lungfish to the genes in humans?


A) cDNA library
B) PCR library
C) genomic library
D) knockout library
E) transgenic library

F) B) and C)
G) A) and D)

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A gene in the fruit fly D. melanogaster is found to affect neuronal function when mutated. A homologue of this gene is identified in mice. Which of the following methods would it make most sense for a scientist to use to study the function of the gene in mice? (Select all that apply.)


A) Forward genetics
B) Reverse genetics
C) Mutagenesis with radiation
D) CRISPR-Cas9 genome editing targeting the gene of interest followed by nonhomologous end joining (NHEJ)
E) CRISPR-Cas9 genome editing targeting the gene of interest followed by homologous recombination (HR) with a donor template

F) A) and C)
G) C) and D)

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Southern blotting is a technique used to transfer _____ to a solid Moderate.


A) DNA
B) RNA
C) protein
D) DNA and RNA
E) DNA, RNA, or protein

F) A) and B)
G) A) and C)

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Use the following to answer questions A student carries out PCR using the following steps: Step 1: 94°C for 1 minute Step 2: 60°C for 30 seconds Step 3: 72°C for 30 seconds -After electrophoresing his PCR reaction, the student sees the desired PCR product on the gel as well as several smaller bands. What error(s) might he have made? (Select all that apply.)


A) He carried out step 2 at too low a temperature
B) He carried out step 2 at too high a temperature.
C) He designed primers with repetitive sequences.
D) He contaminated the template DNA sample.
E) He carried out step 3 for too short a time.

F) A) and D)
G) A) and B)

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